Month: September 2015

Synthetic Neurobiology: Engineering the Brain.

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The notion of engineering the brain to change the way we think and behave may sound like a practice at home in a nightmarish Orwellian dystopia, but it could one day offer hope to those whose cognitive performance and perhaps even their very sense of self has been hijacked by a disease. When we are healthy, it is easy to take for granted the many biological processes taking place within the brain that influence how we think and behave. The fact that any kind of illness, be it mental or physical, can temporarily alter our personality is widely acknowledged; hence the common phrase upon recovering – feeling like yourself again. For some people, however, these changes can be far from transient. Individuals suffering from Alzheimer’s, Parkinson’s, epilepsy, schizophrenia, and a whole host of other neurological ailments can all experience impaired mental performance due to regions of the brain not functioning correctly. Former engineer turned neuroscientist Ed Boyden is leading a team of scientists who make up the Synthetic Neurobiology Group at the Massachusetts Institute of Technology to develop strategies to tackle these problems. Coming from an engineering background, Boyden imagines the brain like a computer system that can be engineered to optimise performance.

“We want to input information into the cells of the network. In other words, enter information like running software on a computer. And that’s important not only to reveal how the brain works, but also so that we can fix it and repair it. Repair computations that are broken”

Boyden’s team are inventing tools for analysing, engineering, and systematically repairing faulty brain circuits. Although in its early days, Boyden foresees this work being able to restore lost sensory perception, temporarily deactivate regions of the epileptic brain during seizure to prevent the spread of electrical impulses, and reactivate neurons that are abnormally inactive in schizophrenia.

“Since neurons compute using electricity, if we can put molecules into the neurons that can convert light into electricity, then we can shine light or even scan it around to target individual cells and turn them on or off. To do that, we’ve been borrowing tools from the natural world. Because there are lots of critters out there that do photosynthesis or that sense light and they do that by converting light into electricity. So we put those molecules in the neurons and then use light to turn those neurons on or off and thereby dial information into the brain.”

Getting light sensitive molecules into neurons

These molecules, found in organisms such as algae, are proteins that are coded for by the organism’s DNA. Boyden’s team take the specific DNA sequences for these molecules and put them into viral gene therapy vectors in the form of re-engineered viruses. These viruses then deliver the DNA into the nuclei of the neurons and initiate biological mechanisms to create the light sensitive molecules and install them all over the membrane of the cell.

“One of the tricks you have to do is to figure out how to deliver these genes to the cells that you want and not all the other neighbours, and you can do that, you can tweak the viruses so that they hit some cells and not others and there are other tricks you can play as well in order to get light activated cells. This field has now come to be known as optogenetics”

As well as simply activating and deactivating cells within the brain, Boyden’s team have grand ideas for how the techniques they are developing could one day work to augment cognition in individuals suffering from Alzheimer’s, or recovering from stroke.

“One of the things that we think a lot about is a concept that we like to call the brain co-processor: a machine that can connect to the brain, observe the information of the brain, compute the information that needs to be computed, and then enter information back into the brain. You can imagine many practical uses for such a thing, not only for understanding the brain, but imagine in disorders such as Alzheimer’s disease or stroke where large circuits of the brain are lost, how do you replace those functionalities, and of course if you can replace the parts that are lost with parts that are easy to upgrade in the future, that’s always a great design principle for bioengineering.”

For more information click the link for a TED talk on YouTube. Ed Boyden: A light switch for neurons.

Richard Gardner

Nathan Wolfe – Virus Hunter. His Mission: To Save The World.

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Although this may sound like the title and tagline of a computer game (and an awesome one at that) it is, in fact, the profile of a pioneering epidemiologist. Wolfe has spent his life studying deadly pathogens and now coordinates scientists and staff in viral ‘hot spots’ around the globe to detect potential worldwide disease pandemics before they kill millions. Dubbed the Indiana Jones of virus Hunters, Wolfe is founder of the non-profit organisation Global Viral whose objective is the discovery of new viruses, establishment of diagnostic labs, collection and testing of human and animal samples, and community health education and training. Wolfe states that the problem with current viral research is that the vast majority of energy is spent on attempting to tackle fully human-adapted viruses. His work focuses on the earlier stages of transmission when pathogens are first entering human populations.

“The main objective of my work is to hunt down these [infection] events – the first moments at the birth of a new pandemic – and then work to understand and stop them before they reach a global stage.”

How do epidemics and pandemics begin?

New human pathogens (such as harmful viruses and bacteria) can enter the population in two ways: The first route is the evolution of a new strain of microbe that has evolved from those currently infecting the population. An example of this would be the constantly evolving variants of MRSA bacteria that continue to plague hospitals and make news headlines. The second and much more common way is that an animal pathogen develops the ability to ‘jump’ from its animal host species into humans via a process known as spillover or crossover. After repeated spillover events, the continuously evolving pathogen may become fully adapted to humans and an epidemic or pandemic may result. Such was the case with SARS in 2003, H1N1 in 2009, and Ebola in 2013. Wolfe proposes that research efforts would be best directed towards better understanding the viral ecology in areas where humans and wild animals are in close contact and these initial ‘jumps’ are made into human communities.

“If we instead investigate spillover events much earlier, then we may be able to predict a rising problem”

By working in regions such as hunting camps in central Africa and the live animal ‘wet’ markets in Asia, Global Viral works with scientists and staff to gather thousands of blood samples from local populations of humans and animals and analyses the data to monitor any change in pathogen presence over time. Locals are given sample kits which they can use to gather blood from the animals they regularly come into contact with. Not only are these individuals helping with the research, but they receive health education and training which they can disseminate within their community as a first line of defence against infection. By regularly analysing new samples, Wolfe states that they can monitor changes in the viral ecology or ‘viral chatter’ and forecast potential future threats.

Nature’s terrorists

Consider it like this: Prior to Wolfe, the majority of attempts to tackle viral outbreaks operated like TV show 24’s Jack Bauer. Something bad is about to go down; something big. Jack and his team of counter-terrorist agents at CTU learn from this that a bigger and more devastating attack could be imminent and they must fight against the clock to prevent catastrophe in the limited window of time they have. Wolfe and his team, however, operate more like intelligence agency data analysts. Studying vast quantities of data over months and years to monitor any suspicious ‘chatter’ that may indicate that a threat is round the corner; affording them time to implement a strategy to neutralise the threat before it gains any momentum. In essence, Global Viral aims to become the CIA and NSA of epidemiology…only far less controversial and there is very little likelihood they will start reading your emails and listening to your telephone conversations.

In an age where deforestation can introduce novel viruses via logging roads into urban areas with global air networks, Wolfe’s work is vital if we are to keep one step ahead of our planet’s dominant life forms – Microbes.

“As a species, I think we have no choice but to try and forecast pandemics…We have such incredible capacity to think about the future, it’s time we used it to predict biological threats. Otherwise we’ll be blindsided again and again.”

Richard Gardner